did the timing belt break? Or skip? Is that why you took it apart? If so, rarely do any engines of this type get away with that, usually 8 valves touch pistons at least, so if you only have 1 or 2 bad ones, you got lucky believe it or not.
You took the head off right? If so, you had the cams out. And as such, if you didn't allow the lifters to sit for a bit(a couple hours) with the engine at TDC, they can still be extending the valves and when you spun it over to start it, you bent a valve or 2.
Also, did you replace the head with just any used head? Because a slightly burned exhaust valve will do this. You can get even 80 psi with a slightly burned exhaust valve. I did one at work, 2 and 3 had 55 and 10 psi. The burn in the 55 psi cylinder was barely noticable unless you were looking for it and the other was quite noticable.