Ok, first off, I bled the clutch until I didn't see anymore air coming out... so I think I did it right. I adjusted the clutch master screw, moved it in and out, but that didn't fix it. Got under the car though and noticed that the release fork doesn't return to the middle position. I can push the fork over a bit (pushing the rod into the slave cyl), but it just slowly returns to just past the middle position. Also, I noticed that there's clutch fluid under that part of the tranny.
Is there anything else I can try to adjust or is it safe to say my slave cylinder is gone and its time for a new one. I just find it kind of weird how it worked before being taken off the engine and after I put the engine back together it has problems now :?
BTW, in case you're not sure, my car is having problems goin into gear when it's running if I start it in neutral, but goes through all the gears smoothly when turned off.